PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18210
Common NameKK1_018743
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 347aa    MW: 38320.9 Da    PI: 6.9507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18210genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-113965127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C+++ rtG C++G++C+F+H+p
  C.cajan_18210 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65
                   5789*********************97 PP

2zf-CCCH375.6e-127195327
                   S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   +++C +++rtG+Ck+G++CkF+H++
  C.cajan_18210 71 EPECAYYLRTGQCKFGNTCKFHHPQ 95
                   589********************97 PP

3zf-CCCH38.91.4e-12227252227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+f+++tG Ck+G+ C+F+H++
  C.cajan_18210 227 DQPECQFYMKTGDCKFGAVCRFHHPR 252
                    689*********************96 PP

4zf-CCCH38.51.9e-12272298127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++lC f++r+G+Ck+G++CkF H++
  C.cajan_18210 272 PGEPLCVFYSRYGICKFGPSCKFDHPM 298
                    589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763966IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-44464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0656896IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-56895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-67196IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-97195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-47494IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624225253IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9227252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6228254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5231253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821271299IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7271298IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5274298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4276296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEFDAAIPVS REHLPQDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLN EPECAYYLRT GQCKFGNTCK FHHPQPNNMV LSMRSSPVYP TVHSPTTPGQ  120
QSYATGITNW SSSSYIPSPR WQGPSSYAPL ILPQGMVSVP GWSAYSGQMG PESPQQTMGN  180
GQSYGTSRQS EPATAGSQGA YSQFRSGSVP VGFYALQRES IFPERPDQPE CQFYMKTGDC  240
KFGAVCRFHH PRERMIPAPD CVLSPIGLPL RPGEPLCVFY SRYGICKFGP SCKFDHPMGI  300
FTYNISASPS ADAPEGLVES GSAKPRRLSL SETRQIPSGD DNIDEEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534518.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A151TAX30.0A0A151TAX3_CAJCA; Uncharacterized protein
STRINGGLYMA09G38650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-134zinc finger protein 1